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C-CoMP Data Management Handbook
  • C-CoMP Data Management Handbook
  • Table of Contents
  • Executive Summary
  • Glossary of Terms
  • Overview
  • C-CoMP Data Roadmap
  • Internal C-CoMP Dataset Numbers
  • Sending samples to other labs
  • Data Group Definitions
  • Data Deposition Instructions
    • Metadata and Tabular Data Files
    • Raw and Derived Data Files
      • LC-MS Metabolomics
      • LC-MS Proteomics
      • NMR Metabolomics
      • Genomics/Sequencing Data
  • Numerical Models
  • Software & Tools
  • Data Products
  • File Naming Conventions
    • LC-MS Metabolomics
    • LC-MS Proteomics
    • NMR Metabolomics
    • Sequencing Files
    • Sequencing Products
    • Numerical Models & Products
    • Derived Files
    • Metadata & Tabular Data
  • File Naming and Data Deposition Example
  • Digital Coordinator Role
  • FAQ
  • Appendix
    • Quick Links
    • Spreadsheet Templates
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  1. Appendix

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Last updated 2 years ago

C-CoMP Open Science Policy:

C-CoMP Website:

C-CoMP GitHub Organization:

C-CoMP Zenodo Community:

Biological and Chemical Oceanography Data Management Office:

BCO-DMO Online Submission Tool:

Ocean Protein Portal (OPP):

MetaboLights Repository:

Proteomics Identifications Database (PRIDE):

Metabolomics Workbench:

Network for Advanced NMR (NAN):

National Center for Biotechnology Information (NCBI):

NCBI Submit Page:

https://ccomp-stc.org/wp-content/uploads/2022/11/C-CoMP_OpenScience_Policy_9.16.22_v1.pdf
https://ccomp-stc.org/
https://github.com/C-CoMP-STC
https://zenodo.org/communities/c-comp/?page=1&size=20
https://www.bco-dmo.org/
https://submit.bco-dmo.org/
https://proteinportal.whoi.edu/
https://www.ebi.ac.uk/metabolights/
https://www.ebi.ac.uk/pride/
https://www.metabolomicsworkbench.org/
https://usnan.nmrhub.org/home
https://www.ncbi.nlm.nih.gov/
https://submit.ncbi.nlm.nih.gov/