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C-CoMP Data Management Handbook
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C-CoMP Data Management Handbook
Table of Contents
Executive Summary
Glossary of Terms
Overview
C-CoMP Data Roadmap
Internal C-CoMP Dataset Numbers
Sending samples to other labs
Data Group Definitions
Data Deposition Instructions
Metadata and Tabular Data Files
Raw and Derived Data Files
Numerical Models
Software & Tools
Data Products
File Naming Conventions
LC-MS Metabolomics
LC-MS Proteomics
NMR Metabolomics
Sequencing Files
Sequencing Products
Numerical Models & Products
Derived Files
Metadata & Tabular Data
File Naming and Data Deposition Example
Digital Coordinator Role
FAQ
Appendix
Quick Links
Spreadsheet Templates
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Quick Links
C-CoMP Open Science Policy:
https://ccomp-stc.org/wp-content/uploads/2022/11/C-CoMP_OpenScience_Policy_9.16.22_v1.pdf
C-CoMP Website:
https://ccomp-stc.org/
C-CoMP GitHub Organization:
https://github.com/C-CoMP-STC
C-CoMP Zenodo Community:
https://zenodo.org/communities/c-comp/?page=1&size=20
Biological and Chemical Oceanography Data Management Office:
https://www.bco-dmo.org/
BCO-DMO Online Submission Tool:
https://submit.bco-dmo.org/
Ocean Protein Portal (OPP):
https://proteinportal.whoi.edu/
MetaboLights Repository:
https://www.ebi.ac.uk/metabolights/
Proteomics Identifications Database (PRIDE):
https://www.ebi.ac.uk/pride/
Metabolomics Workbench:
https://www.metabolomicsworkbench.org/
Network for Advanced NMR (NAN):
https://usnan.nmrhub.org/home
National Center for Biotechnology Information (NCBI):
https://www.ncbi.nlm.nih.gov/
NCBI Submit Page:
https://submit.ncbi.nlm.nih.gov/
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Last modified
10mo ago