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C-CoMP Data Management Handbook
  • C-CoMP Data Management Handbook
  • Table of Contents
  • Executive Summary
  • Glossary of Terms
  • Overview
  • C-CoMP Data Roadmap
  • Internal C-CoMP Dataset Numbers
  • Sending samples to other labs
  • Data Group Definitions
  • Data Deposition Instructions
    • Metadata and Tabular Data Files
    • Raw and Derived Data Files
      • LC-MS Metabolomics
      • LC-MS Proteomics
      • NMR Metabolomics
      • Genomics/Sequencing Data
  • Numerical Models
  • Software & Tools
  • Data Products
  • File Naming Conventions
    • LC-MS Metabolomics
    • LC-MS Proteomics
    • NMR Metabolomics
    • Sequencing Files
    • Sequencing Products
    • Numerical Models & Products
    • Derived Files
    • Metadata & Tabular Data
  • File Naming and Data Deposition Example
  • Digital Coordinator Role
  • FAQ
  • Appendix
    • Quick Links
    • Spreadsheet Templates
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  1. Data Deposition Instructions

Raw and Derived Data Files

Raw and derived files generated by C-CoMP will ultimately be stored in at least two separate locations (local and cloud-based). Raw files should never be manipulated or modified to preserve their integrity (they should be ‘read-only’).

  1. Computer or server in lab of origin

  2. Domain repository

    1. MetaboLights - LC-MS metabolomics

    2. ProteomeXchange - LC-MS proteomics

    3. Metabolomics workbench (and others) - NMR metabolomics

    4. Sequence Read Archive - Sequencing

This is to ensure that 1) there are multiple back-ups, 2) C-CoMP members have access to the raw and derived files for each sub-project to facilitate collaboration, 3) data is publicly accessible on domain repositories and linked to metadata on BCO-DMO.

Instructions for submitting raw and derived files (if applicable) follow this section. Please submit raw and derived (if applicable) files in this proposed order.

PreviousMetadata and Tabular Data FilesNextLC-MS Metabolomics

Last updated 2 years ago