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C-CoMP Data Management Handbook
  • C-CoMP Data Management Handbook
  • Table of Contents
  • Executive Summary
  • Glossary of Terms
  • Overview
  • C-CoMP Data Roadmap
  • Internal C-CoMP Dataset Numbers
  • Sending samples to other labs
  • Data Group Definitions
  • Data Deposition Instructions
    • Metadata and Tabular Data Files
    • Raw and Derived Data Files
      • LC-MS Metabolomics
      • LC-MS Proteomics
      • NMR Metabolomics
      • Genomics/Sequencing Data
  • Numerical Models
  • Software & Tools
  • Data Products
  • File Naming Conventions
    • LC-MS Metabolomics
    • LC-MS Proteomics
    • NMR Metabolomics
    • Sequencing Files
    • Sequencing Products
    • Numerical Models & Products
    • Derived Files
    • Metadata & Tabular Data
  • File Naming and Data Deposition Example
  • Digital Coordinator Role
  • FAQ
  • Appendix
    • Quick Links
    • Spreadsheet Templates
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  1. File Naming Conventions

Sequencing Products

PreviousSequencing FilesNextNumerical Models & Products

Last updated 2 years ago

Field Definitions

  1. Dataset Number:

    • All C-CoMP datasets will be assigned an internal dataset number. Please request this number on the #dataset_number_requests slack channel following the instructions provided above.

    • Metadata about the dataset (including Dataset number, method type, and data storage location) will be recorded in the C-CoMP Data Catalog.

  2. Assembly Type:

    • The kind of method that was used for this specific project X sample (see examples and abbreviations below)

  3. File Number (File_No)

  4. Assembly Version

    1. This field indicates the version number of the assembly

  5. File-type Extension

Assembly type:

MAG - Metagenome assembled genomes based on de-novo assembly. Read more about MAGs .

here
This file name refers to version one (v01) of a metagenome assembled genome from sequences in file number 8.