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C-CoMP Data Management Handbook
  • C-CoMP Data Management Handbook
  • Table of Contents
  • Executive Summary
  • Glossary of Terms
  • Overview
  • C-CoMP Data Roadmap
  • Internal C-CoMP Dataset Numbers
  • Sending samples to other labs
  • Data Group Definitions
  • Data Deposition Instructions
    • Metadata and Tabular Data Files
    • Raw and Derived Data Files
      • LC-MS Metabolomics
      • LC-MS Proteomics
      • NMR Metabolomics
      • Genomics/Sequencing Data
  • Numerical Models
  • Software & Tools
  • Data Products
  • File Naming Conventions
    • LC-MS Metabolomics
    • LC-MS Proteomics
    • NMR Metabolomics
    • Sequencing Files
    • Sequencing Products
    • Numerical Models & Products
    • Derived Files
    • Metadata & Tabular Data
  • File Naming and Data Deposition Example
  • Digital Coordinator Role
  • FAQ
  • Appendix
    • Quick Links
    • Spreadsheet Templates
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  1. Data Deposition Instructions
  2. Raw and Derived Data Files

LC-MS Metabolomics

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Last updated 2 years ago

C-CoMP will use the EMBL-EBI repository to host raw and derived targeted and untargeted LC-MS Metabolomics data generated by C-CoMP.

General directions

  1. Create a MetaboLights account (if you do not already have one) and log in.

  2. Click on the ‘Submit Study’ button to begin the submission process.

    • You can use this button to submit a new study or update an existing study.

  3. If you create a new study, you will need to complete the following tasks:

    1. Upload raw and derived files.

      • You will need to use FTP or Aspera to upload your raw and derived files.

    2. Complete the study description.

    3. Complete the sample and assay information description.

After submission, the MetaboLights team will curate your study and ask for additional information. MetaboLights can generate ‘reviewer links’ for studies that are not public.

MetaboLights