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C-CoMP Data Management Handbook
  • C-CoMP Data Management Handbook
  • Table of Contents
  • Executive Summary
  • Glossary of Terms
  • Overview
  • C-CoMP Data Roadmap
  • Internal C-CoMP Dataset Numbers
  • Sending samples to other labs
  • Data Group Definitions
  • Data Deposition Instructions
    • Metadata and Tabular Data Files
    • Raw and Derived Data Files
      • LC-MS Metabolomics
      • LC-MS Proteomics
      • NMR Metabolomics
      • Genomics/Sequencing Data
  • Numerical Models
  • Software & Tools
  • Data Products
  • File Naming Conventions
    • LC-MS Metabolomics
    • LC-MS Proteomics
    • NMR Metabolomics
    • Sequencing Files
    • Sequencing Products
    • Numerical Models & Products
    • Derived Files
    • Metadata & Tabular Data
  • File Naming and Data Deposition Example
  • Digital Coordinator Role
  • FAQ
  • Appendix
    • Quick Links
    • Spreadsheet Templates
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  1. Data Deposition Instructions
  2. Raw and Derived Data Files

Genomics/Sequencing Data

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Last updated 2 years ago

Sequencing data will be deposited to the National Center for Biotechnology Information’s (SRA).

Please register 1) one project/study BioProject accession number and 2) individual BioSample submissions for each file. These steps are necessary to provide enough metadata about each sample within SRA and to link sequences back to metadata stored at BCO-DMO. While BCO-DMO does not host sequencing data, metadata about each file and links to the bioSample and SRA accession numbers should be submitted to BCO-DMO to support data reuse. For more information, please visit the in the BCO-DMO "How To?" GitBook.

Overview directions for submitting to NCBI’s Sequence Read Archive (SRA)

  1. Create an account or login to your NCBI account .

  2. Use NCBI’s to create and register your BioProject and BioSample entries (containing metadata about each sequenced sample) following the prompts.

    1. Creating BioSamples can be time consuming. Please ask the Digital Coordinator and/or reach out to NCBI for assistance.

  3. Create a new SRA submission (click on the ‘New submission’ button).

  4. Submit SRA metadata - information that will link your project, samples/experiments and file names. Please refer to the .

  5. Upload raw sequence data files. Please refer to .

Sequence Read Archive
Contributing Genetic Accessions page
here
Portal Wizard
SRA Metadata Overview
SRA File Upload help